Download MendeleyCrystal structure of Zinc binding protein ZinT at 1.49 Angstrom from E. coli
Chen, J., Wang, L., Guo, J., Xu, Y.To be published.
5XM5
Crystal structure of Zinc binding protein ZinT at 1.49 Angstrom from E. coli
- PDB DOI: https://doi.org/10.2210/pdb5XM5/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
- Mutation(s): No
- Deposited: 2017-05-12 Released: 2017-05-31
- Funding Organization(s): The National Natural Science Foundation of China, the Program for Liaoning Excellent Talents in University, the Fundamental Research Funds for the Central Universities
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 Å
- R-Value Free: 0.234
- R-Value Work: 0.179
- R-Value Observed: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Metal-binding protein ZinT | A, B | 193 | Escherichia coli K-12 | Mutation(s): 0 Gene Names: zinT, yodA, b1973, JW1956 |  |
UniProt | |||||
Find proteins for P76344 (Escherichia coli (strain K12)) Explore P76344 Go to UniProtKB: P76344 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P76344 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], D [auth A], E [auth A], I [auth B], J [auth B], | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| NA Query on NA | F [auth A], G [auth A], H [auth A], L [auth B], M [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.49 Å
- R-Value Free: 0.234
- R-Value Work: 0.179
- R-Value Observed: 0.181
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.021 | α = 90 |
| b = 65.724 | β = 91.24 |
| c = 73.532 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data collection |
| PHENIX | phasing |
| HKL-2000 | data extraction |
| HKL-2000 | data processing |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| The National Natural Science Foundation of China | China | 31200556 |
| the Program for Liaoning Excellent Talents in University | China | LJQ2015030 |
| the Fundamental Research Funds for the Central Universities | China | DC201502020203 |
Revision History (Full details and data files)
- Version 1.0: 2017-05-31
Type: Initial release - Version 1.1: 2019-12-04
Changes: Data collection
