5XJT

Crystal Structure of the Gemin2-binding domain of SMN, Gemin2 in Complex with SmD1(1-82)/D2.R61A/F/E/G from Human

  • Classification: SPLICING
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): Yes 

  • Deposited: 2017-05-04 Released: 2018-07-04 
  • Deposition Author(s): Yi, H., Zhang, R.
  • Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structures of 7S mutant complexes

Yi, H., Zhang, R.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Gem-associated protein 2 2280Homo sapiensMutation(s): 0 
Gene Names: GEMIN2, SIP1
Find proteins for O14893 (Homo sapiens)
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PHAROS:  O14893
GTEx:  ENSG00000092208
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein Sm D1 A82Homo sapiensMutation(s): 0 
Gene Names: SNRPD1
Find proteins for P62314 (Homo sapiens)
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PHAROS:  P62314
GTEx:  ENSG00000167088
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein Sm D2 B118Homo sapiensMutation(s): 1 
Gene Names: SNRPD2, SNRPD1
Find proteins for P62316 (Homo sapiens)
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PHAROS:  P62316
GTEx:  ENSG00000125743
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein E E92Homo sapiensMutation(s): 0 
Gene Names: SNRPE
Find proteins for P62304 (Homo sapiens)
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PHAROS:  P62304
GTEx:  ENSG00000182004
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein F F86Homo sapiensMutation(s): 0 
Gene Names: SNRPF, PBSCF
Find proteins for P62306 (Homo sapiens)
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PHAROS:  P62306
GTEx:  ENSG00000139343
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Small nuclear ribonucleoprotein G G76Homo sapiensMutation(s): 0 
Gene Names: SNRPG, PBSCG
Find proteins for P62308 (Homo sapiens)
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PHAROS:  P62308
GTEx:  ENSG00000143977
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Survival motor neuron protein M37Homo sapiensMutation(s): 0 
Gene Names: SMN1, SMN, SMNT, SMN2, SMNC
Find proteins for Q16637 (Homo sapiens)
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Go to UniProtKB:  Q16637
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PHAROS:  Q16637
GTEx:  ENSG00000172062ENSG00000205571
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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.92 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.203 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.64α = 90
b = 84.76β = 90
c = 114.33γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata collection
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
DENZOdata reduction
PHASERphasing

Structure Validation

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View more in-depth experimental data

Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-05-04 
  • Released Date: 2018-07-04 
    • Deposition Author(s): Yi, H., Zhang, R.
Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31570720
National Natural Science Foundation of ChinaChina81441109

Revision History  (Full details and data files)

  • Version 1.0: 2018-07-04
    Type: Initial release