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Download EndnoteK11/48-branched teraubiquitin
Liang, L., Gao, S.To be published.
5XDP
K11/48-branched teraubiquitin
- DOI: 10.2210/pdb5XDP/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Deposited: 2017-03-28 Released: 2017-04-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.376 Å
- R-Value Free: 0.271
- R-Value Work: 0.234
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-ubiquitin | B | 76 | N/A | Mutation(s): 0 |
| Protein Feature View is not available: No corresponding UniProt sequence found. | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| ubiquitin-B | A | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBB |
Find proteins for P0CG47 (Homo sapiens) Go to Gene View: UBB Go to UniProtKB: P0CG47 | ||||
Small Molecules
| Modified Residues 17 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| DIL Query on DIL | B | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DNE Query on DNE | B | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DPR Query on DPR | B | D-PEPTIDE LINKING | C5 H9 N O2 |  | -- |
| DLY Query on DLY | B | D-PEPTIDE LINKING | C6 H14 N2 O2 |  | -- |
| DHI Query on DHI | B | D-PEPTIDE LINKING | C6 H10 N3 O2 |  | -- |
| DSN Query on DSN | B | D-PEPTIDE LINKING | C3 H7 N O3 |  | -- |
| DVA Query on DVA | B | D-PEPTIDE LINKING | C5 H11 N O2 |  | -- |
| DTH Query on DTH | B | D-PEPTIDE LINKING | C4 H9 N O3 |  | -- |
| DLE Query on DLE | B | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DGL Query on DGL | B | D-PEPTIDE LINKING | C5 H9 N O4 |  | -- |
| DAL Query on DAL | B | D-PEPTIDE LINKING | C3 H7 N O2 |  | -- |
| DPN Query on DPN | B | D-PEPTIDE LINKING | C9 H11 N O2 |  | -- |
| DGN Query on DGN | B | D-PEPTIDE LINKING | C5 H10 N2 O3 |  | -- |
| DAS Query on DAS | B | D-PEPTIDE LINKING | C4 H7 N O4 |  | -- |
| DSG Query on DSG | B | D-PEPTIDE LINKING | C4 H8 N2 O3 |  | -- |
| DTY Query on DTY | B | D-PEPTIDE LINKING | C9 H11 N O3 |  | -- |
| DAR Query on DAR | B | D-PEPTIDE LINKING | C6 H15 N4 O2 |  | -- |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.376 Å
- R-Value Free: 0.271
- R-Value Work: 0.234
- Space Group: P 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 25.938 | α = 103.03 |
| b = 26.163 | β = 94.16 |
| c = 46.540 | γ = 99.65 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| PHENIX | refinement |
| HKL-3000 | data scaling |
