5XDP

K11/48-branched teraubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.376 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.234 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

K11/48-branched teraubiquitin

Liang, L.Gao, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
D-ubiquitin
B
76N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
ubiquitin-B
A
76Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Small Molecules
Modified Residues  17 Unique
IDChainsTypeFormula2D DiagramParent
DIL
Query on DIL
B
D-PEPTIDE LINKINGC6 H13 N O2

--

DNE
Query on DNE
B
D-PEPTIDE LINKINGC6 H13 N O2

--

DPR
Query on DPR
B
D-PEPTIDE LINKINGC5 H9 N O2

--

DLY
Query on DLY
B
D-PEPTIDE LINKINGC6 H14 N2 O2

--

DHI
Query on DHI
B
D-PEPTIDE LINKINGC6 H10 N3 O2

--

DSN
Query on DSN
B
D-PEPTIDE LINKINGC3 H7 N O3

--

DVA
Query on DVA
B
D-PEPTIDE LINKINGC5 H11 N O2

--

DTH
Query on DTH
B
D-PEPTIDE LINKINGC4 H9 N O3

--

DLE
Query on DLE
B
D-PEPTIDE LINKINGC6 H13 N O2

--

DGL
Query on DGL
B
D-PEPTIDE LINKINGC5 H9 N O4

--

DAL
Query on DAL
B
D-PEPTIDE LINKINGC3 H7 N O2

--

DPN
Query on DPN
B
D-PEPTIDE LINKINGC9 H11 N O2

--

DGN
Query on DGN
B
D-PEPTIDE LINKINGC5 H10 N2 O3

--

DAS
Query on DAS
B
D-PEPTIDE LINKINGC4 H7 N O4

--

DSG
Query on DSG
B
D-PEPTIDE LINKINGC4 H8 N2 O3

--

DTY
Query on DTY
B
D-PEPTIDE LINKINGC9 H11 N O3

--

DAR
Query on DAR
B
D-PEPTIDE LINKINGC6 H15 N4 O2

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.376 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.234 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 25.938α = 103.03
b = 26.163β = 94.16
c = 46.540γ = 99.65
Software Package:
Software NamePurpose
HKL-3000data reduction
PHENIXrefinement
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-19
    Type: Initial release