Download MendeleyCrystallographic study of homoserine dehydrogenase from Thermus thermophilus HB8
Akai, S., Ikushiro, H., Sawai, D., Hayashi, H., Kamiya, N., Miyahara, I.To be published.
5XDF
Homoserine dehydrogenase from Thermus thermophilus HB8 complexed with HSE
- PDB DOI: https://doi.org/10.2210/pdb5XDF/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2017-03-28 Released: 2017-04-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.219
- R-Value Work: 0.185
- R-Value Observed: 0.186
wwPDB Validation 3D Report Full Report
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Homoserine dehydrogenase | 332 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: TTHA0489 EC: 1.1.1.3 |  | |
UniProt | |||||
Find proteins for Q5SL04 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SL04 Go to UniProtKB: Q5SL04 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q5SL04 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| HSE Query on HSE | C [auth A], F [auth B] | L-HOMOSERINE C4 H9 N O3 UKAUYVFTDYCKQA-VKHMYHEASA-N |  | ||
| FMT Query on FMT | E [auth A], H [auth B] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |  | ||
| NA Query on NA | D [auth A], G [auth B] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.219
- R-Value Work: 0.185
- R-Value Observed: 0.186
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 119.625 | α = 90 |
| b = 119.625 | β = 90 |
| c = 145.02 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2017-04-26 Deposition Author(s): Akai, S., Miyahara, I.
Revision History (Full details and data files)
- Version 1.0: 2017-04-26
Type: Initial release - Version 1.1: 2020-02-26
Changes: Data collection - Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Database references
