5XBV | pdb_00005xbv

Crystal structure of Wss1 mutant from saccharomyces cerevisiae

• PDB DOI: https://doi.org/10.2210/pdb5XBV/pdb

• Classification: HYDROLASE
• Organism(s): Saccharomyces cerevisiae FostersO
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2017-03-21 Released: 2018-03-28 
• Deposition Author(s): Dong, Y.H., Yang, X.Y., Wang, W.J.
• Funding Organization(s): National Natural Science Foundation of China

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.200 (Depositor), 0.206 (DCC) 
• R-Value Work: 
  0.173 (Depositor) 
• R-Value Observed: 
  0.174 (Depositor) 

Literature

crystal structure of Wss1 mutant from saccharomyces cerevisiae

Dong, Y.H., Yang, X.Y., Wang, W.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: SAXS

Macromolecule Content 

• Total Structure Weight: 17.51 kDa 
• Atom Count: 1,196 
• Modeled Residue Count: 126 
• Deposited Residue Count: 149 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Wss1p	A	149	Saccharomyces cerevisiae FostersO	Mutation(s): 1  Gene Names: FOSTERSO_2154

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.200 (Depositor), 0.206 (DCC) 
• R-Value Work:  0.173 (Depositor) 
• R-Value Observed: 0.174 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.202	α = 90
b = 86.202	β = 90
c = 36.287	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2018-03-28 
Deposition Author(s): Dong, Y.H., Yang, X.Y., Wang, W.J.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31600597

Revision History  

• Version 1.0: 2018-03-28
  Type: Initial release
  
• Version 1.1: 2024-03-27
  Changes: Data collection, Database references