5X9C | pdb_00005x9c

Crystal structure of the cytosolic domain of human MiD51

PDB DOI: https://doi.org/10.2210/pdb5X9C/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-03-06 Released: 2018-03-21
Deposition Author(s): Sun, F., Pang, X., Ma, J.
Funding Organization(s): the Chinese Ministry of Science and Technology, the Chinese Academy of Science

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free:
0.232 (Depositor), 0.207 (DCC)
R-Value Work:
0.203 (Depositor), 0.207 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 5X9C

This is version 1.1 of the entry. See complete history.

Literature

New interfaces on MiD51 for Drp1 recruitment and mitochondrial fission regulation

Ma, J., Zhai, Y., Chen, M., Zhang, K., Shi, Y., Chen, Q., Pang, X., Sun, F.

To be published.

Macromolecule Content

Total Structure Weight: 74.89 kDa
Atom Count: 5,385
Modeled Residue Count: 660
Deposited Residue Count: 672
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial dynamics protein MID51	A, B	336	Homo sapiens	Mutation(s): 0 Gene Names: MID51
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NQG6 (Homo sapiens) Explore Q9NQG6 Go to UniProtKB: Q9NQG6
PHAROS: Q9NQG6 GTEx: ENSG00000100335
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9NQG6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.232 (Depositor), 0.207 (DCC)
R-Value Work: 0.203 (Depositor), 0.207 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.297	α = 89.81
b = 64.666	β = 108.08
c = 65.914	γ = 117.19

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2018-03-21

Deposition Author(s):

Funding Organization	Location	Grant Number
the Chinese Ministry of Science and Technology	China	2014CB910700, 2011CB910301
the Chinese Academy of Science	China	XDB08030202

Revision History (Full details and data files)

Version 1.0: 2018-03-21
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.