5X8Z | pdb_00005x8z

Unique Choloylglycine Hydrolase(CGH) member from Shewanella loihica PV-4

• PDB DOI: https://doi.org/10.2210/pdb5X8Z/pdb

• Classification: HYDROLASE
• Organism(s): Shewanella loihica PV-4
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-03-03 Released: 2018-03-07 
• Deposition Author(s): Ramasamy, S., Philem, P.D., Yadav, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 
  0.216 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.190 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.191 (Depositor) 

Starting Model: experimental

Literature

Unique Choloylglycine Hydrolase(CGH) member from Shewanella loihica PV-4

Philem, P.D., Yadav, Y., Prabune, A.A., Ramasamy, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 75.89 kDa 
• Atom Count: 5,374 
• Modeled Residue Count: 666 
• Deposited Residue Count: 678 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Penicillin V acylase-like protein	A, B	339	Shewanella loihica PV-4	Mutation(s): 0  Gene Names: Shew_0681
UniProt
Find proteins for A3QAQ5 (Shewanella loihica (strain ATCC BAA-1088 / PV-4)) Explore A3QAQ5  Go to UniProtKB:  A3QAQ5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free:  0.216 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.190 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.191 (Depositor) 

Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.397	α = 90
b = 52.337	β = 103.81
c = 140.068	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
PHENIX	phasing
PHENIX	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-03-07 
Deposition Author(s): Ramasamy, S., Philem, P.D., Yadav, Y.

Revision History  

• Version 1.0: 2018-03-07
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description