5X6X

Crystal structure of the capping enzyme P5 from Rice Dwarf Virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.191 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal structure of the capping enzyme P5 from Rice Dwarf Virus

Nakamichi, Y.Higashiura, A.Narita, H.Hagiwara, K.Uehara-Ichiki, T.Omura, T.Nakagawa, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
mRNA capping enzyme P5B [auth A], C [auth B], A [auth C], D804Rice dwarf virus (isolate O)Mutation(s): 0 
EC: 2.7.7.50
UniProt
Find proteins for P14583 (Rice dwarf virus (isolate Akita))
Explore P14583 
Go to UniProtKB:  P14583
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.191 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 77.23α = 103.41
b = 83.854β = 102.47
c = 143.25γ = 95.37
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
AutoSolphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
JSPSJapanJP25251009

Revision History  (Full details and data files)

  • Version 1.0: 2018-02-28
    Type: Initial release