5X6A | pdb_00005x6a

Crystal structure of an endoglucanase PMO-5

• PDB DOI: https://doi.org/10.2210/pdb5X6A/pdb

• Classification: HYDROLASE
• Organism(s): Aspergillus fumigatus Af293
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-02-21 Released: 2018-02-21 
• Deposition Author(s): Shen, Q.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.166 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.135 (Depositor), 0.150 (DCC) 
• R-Value Observed: 
  0.136 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of an endoglucanase PMO-5

Shen, Q.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 48.39 kDa 
• Atom Count: 3,946 
• Modeled Residue Count: 458 
• Deposited Residue Count: 458 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endoglucanase, putative	A, B	229	Aspergillus fumigatus Af293	Mutation(s): 0  Gene Names: AFUA_4G07850 EC: 3.2.1 (PDB Primary Data), 1.14.99.56 (UniProt)
UniProt
Find proteins for Q4WP32 (Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)) Explore Q4WP32  Go to UniProtKB:  Q4WP32

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	C [auth A], D [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.166 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.135 (Depositor), 0.150 (DCC) 
• R-Value Observed: 0.136 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.054	α = 75.55
b = 48.926	β = 88.29
c = 54.192	γ = 76.51

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data processing
AutoSol	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2018-02-21 
Deposition Author(s): Shen, Q.

Revision History  

• Version 1.0: 2018-02-21
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-10-16
  Changes: Structure summary