5X5S | pdb_00005x5s

Ligand induced structure of AmyP-SBD

PDB DOI: https://doi.org/10.2210/pdb5X5S/pdb
BMRB: 36061

Classification: HYDROLASE
Organism(s): uncultured bacterium
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-02-17 Released: 2017-04-05
Deposition Author(s): Li, X., Yu, J., Sun, H., Zhang, X.
Funding Organization(s): Chinese National Natural Science Foundation

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 5X5S

This is version 1.2 of the entry. See complete history.

Literature

Ligand binding induced folding of a novel CBM69 starch binding domain

Li, X., Yu, J., Tu, X., Sun, H., Peng, H., Zhang, X.

To be published.

Macromolecule Content

Total Structure Weight: 17.02 kDa
Atom Count: 1,121
Modeled Residue Count: 149
Deposited Residue Count: 157
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amylase	A	157	uncultured bacterium	Mutation(s): 0 Gene Names: Amy-1E
UniProt
Find proteins for D9MZ14 (uncultured bacterium) Explore D9MZ14 Go to UniProtKB: D9MZ14
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	D9MZ14
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 10
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2017-04-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Chinese National Natural Science Foundation	China	31470775

Revision History (Full details and data files)

Version 1.0: 2017-04-05
Type: Initial release
Version 1.1: 2023-06-14
Changes: Data collection, Database references, Other, Refinement description
Version 1.2: 2024-11-20
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.