5X5R

Crystal structure of a hydrolase from Listeria innocua

PDB DOI: https://doi.org/10.2210/pdb5X5R/pdb

Classification: HYDROLASE
Organism(s): Listeria innocua Clip11262
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2017-02-17 Released: 2018-02-21
Deposition Author(s): Zhang, J., Zhou, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.64 Å
R-Value Free: 0.235
R-Value Work: 0.202
R-Value Observed: 0.203

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a hydrolase encoded by lin2189 from Listeria innocua

Zhang, J., Zhou, J.

To be published.

Macromolecule Content

Total Structure Weight: 50.73 kDa
Atom Count: 3,365
Modelled Residue Count: 385
Deposited Residue Count: 432
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lin2189 protein	A, B	216	Listeria innocua Clip11262	Mutation(s): 2 Gene Names: lin2189
UniProt
Find proteins for Q929T5 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)) Explore Q929T5 Go to UniProtKB: Q929T5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q929T5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.64 Å
R-Value Free: 0.235
R-Value Work: 0.202
R-Value Observed: 0.203
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.011	α = 90
b = 48.759	β = 125.51
c = 80.301	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-02-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-02-21
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.