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Download EndnoteStructure of p-DiUb-S65-COOH at 2.19 Angstroms resolution.
Man, P., Shuai, G., Qian, Q., Lei, L.To be published.
5X3O
Crystal structure of p-DiUb-S65-COOH
- DOI: 10.2210/pdb5X3O/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli K-12
- Deposited: 2017-02-06 Released: 2017-04-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.194 Å
- R-Value Free: 0.315
- R-Value Work: 0.240
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Polyubiquitin-B | A | 76 | Homo sapiens | Mutation(s): 0 Gene Names: UBB |
Find proteins for P0CG47 (Homo sapiens) Go to Gene View: UBB Go to UniProtKB: P0CG47 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| D-ubiquitin | D | 76 | N/A | Mutation(s): 0 |
| Protein Feature View is not available: No corresponding UniProt sequence found. | ||||
Small Molecules
| Modified Residues 18 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| DIL Query on DIL | D | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DNE Query on DNE | D | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DPR Query on DPR | D | D-PEPTIDE LINKING | C5 H9 N O2 |  | -- |
| DLY Query on DLY | D | D-PEPTIDE LINKING | C6 H14 N2 O2 |  | -- |
| DHI Query on DHI | D | D-PEPTIDE LINKING | C6 H10 N3 O2 |  | -- |
| SEP Query on SEP | A | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
| DSN Query on DSN | D | D-PEPTIDE LINKING | C3 H7 N O3 |  | -- |
| DVA Query on DVA | D | D-PEPTIDE LINKING | C5 H11 N O2 |  | -- |
| DTH Query on DTH | D | D-PEPTIDE LINKING | C4 H9 N O3 |  | -- |
| DLE Query on DLE | D | D-PEPTIDE LINKING | C6 H13 N O2 |  | -- |
| DGL Query on DGL | D | D-PEPTIDE LINKING | C5 H9 N O4 |  | -- |
| DAL Query on DAL | D | D-PEPTIDE LINKING | C3 H7 N O2 |  | -- |
| DPN Query on DPN | D | D-PEPTIDE LINKING | C9 H11 N O2 |  | -- |
| DGN Query on DGN | D | D-PEPTIDE LINKING | C5 H10 N2 O3 |  | -- |
| DAS Query on DAS | D | D-PEPTIDE LINKING | C4 H7 N O4 |  | -- |
| DSG Query on DSG | D | D-PEPTIDE LINKING | C4 H8 N2 O3 |  | -- |
| DTY Query on DTY | D | D-PEPTIDE LINKING | C9 H11 N O3 |  | -- |
| DAR Query on DAR | D | D-PEPTIDE LINKING | C6 H15 N4 O2 |  | -- |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.194 Å
- R-Value Free: 0.315
- R-Value Work: 0.240
- Space Group: P 1 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 40.608 | α = 90.00 |
| b = 33.764 | β = 103.49 |
| c = 44.686 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
