5X3O

Crystal structure of p-DiUb-S65-COOH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.194 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.240 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of p-DiUb-S65-COOH at 2.19 Angstroms resolution.

Man, P.Shuai, G.Qian, Q.Lei, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyubiquitin-B
A
76Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
D-ubiquitin
D
76N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  18 Unique
IDChainsTypeFormula2D DiagramParent
DIL
Query on DIL
D
D-PEPTIDE LINKINGC6 H13 N O2

--

DNE
Query on DNE
D
D-PEPTIDE LINKINGC6 H13 N O2

--

DPR
Query on DPR
D
D-PEPTIDE LINKINGC5 H9 N O2

--

DLY
Query on DLY
D
D-PEPTIDE LINKINGC6 H14 N2 O2

--

DHI
Query on DHI
D
D-PEPTIDE LINKINGC6 H10 N3 O2

--

SEP
Query on SEP
A
L-PEPTIDE LINKINGC3 H8 N O6 PSER
DSN
Query on DSN
D
D-PEPTIDE LINKINGC3 H7 N O3

--

DVA
Query on DVA
D
D-PEPTIDE LINKINGC5 H11 N O2

--

DTH
Query on DTH
D
D-PEPTIDE LINKINGC4 H9 N O3

--

DLE
Query on DLE
D
D-PEPTIDE LINKINGC6 H13 N O2

--

DGL
Query on DGL
D
D-PEPTIDE LINKINGC5 H9 N O4

--

DAL
Query on DAL
D
D-PEPTIDE LINKINGC3 H7 N O2

--

DPN
Query on DPN
D
D-PEPTIDE LINKINGC9 H11 N O2

--

DGN
Query on DGN
D
D-PEPTIDE LINKINGC5 H10 N2 O3

--

DAS
Query on DAS
D
D-PEPTIDE LINKINGC4 H7 N O4

--

DSG
Query on DSG
D
D-PEPTIDE LINKINGC4 H8 N2 O3

--

DTY
Query on DTY
D
D-PEPTIDE LINKINGC9 H11 N O3

--

DAR
Query on DAR
D
D-PEPTIDE LINKINGC6 H15 N4 O2

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.194 Å
  • R-Value Free: 0.315 
  • R-Value Work: 0.240 
  • Space Group: P 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 40.608α = 90.00
b = 33.764β = 103.49
c = 44.686γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-12
    Type: Initial release