5X3M

crystal structure of p-Ub-S65-NH2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.818 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution

Man, P.Shuai, G.Qian, Q.Lei, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyubiquitin-B
A
76Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
D-ubiquitin
D
76N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Modified Residues  18 Unique
IDChainsTypeFormula2D DiagramParent
DIL
Query on DIL
D
D-PEPTIDE LINKINGC6 H13 N O2

--

DNE
Query on DNE
D
D-PEPTIDE LINKINGC6 H13 N O2

--

DPR
Query on DPR
D
D-PEPTIDE LINKINGC5 H9 N O2

--

DLY
Query on DLY
D
D-PEPTIDE LINKINGC6 H14 N2 O2

--

DHI
Query on DHI
D
D-PEPTIDE LINKINGC6 H10 N3 O2

--

SEP
Query on SEP
A
L-PEPTIDE LINKINGC3 H8 N O6 PSER
DSN
Query on DSN
D
D-PEPTIDE LINKINGC3 H7 N O3

--

DVA
Query on DVA
D
D-PEPTIDE LINKINGC5 H11 N O2

--

DTH
Query on DTH
D
D-PEPTIDE LINKINGC4 H9 N O3

--

DLE
Query on DLE
D
D-PEPTIDE LINKINGC6 H13 N O2

--

DGL
Query on DGL
D
D-PEPTIDE LINKINGC5 H9 N O4

--

DAL
Query on DAL
D
D-PEPTIDE LINKINGC3 H7 N O2

--

DPN
Query on DPN
D
D-PEPTIDE LINKINGC9 H11 N O2

--

DGN
Query on DGN
D
D-PEPTIDE LINKINGC5 H10 N2 O3

--

DAS
Query on DAS
D
D-PEPTIDE LINKINGC4 H7 N O4

--

DSG
Query on DSG
D
D-PEPTIDE LINKINGC4 H8 N2 O3

--

DTY
Query on DTY
D
D-PEPTIDE LINKINGC9 H11 N O3

--

DAR
Query on DAR
D
D-PEPTIDE LINKINGC6 H15 N4 O2

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.818 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.206 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 28.914α = 81.91
b = 29.969β = 72.38
c = 39.726γ = 62.43
Software Package:
Software NamePurpose
HKL-3000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-04-05
    Type: Initial release