5X3J

Kfla1895 D451A mutant in complex with cyclobis-(1->6)-alpha-nigerosyl


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Glycoside hydrolase mutant in complex with substrate

Tanaka, Y.Chen, M.Tagami, T.Yao, M.Kimura, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glycoside hydrolase family 31
A, B
743Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)Mutation(s): 1 
EC: 3.2.1.204
Find proteins for D2PPM7 (Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399))
Go to UniProtKB:  D2PPM7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
GLC
Query on GLC

Download SDF File 
Download CCD File 
A, B
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.189 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 180.538α = 90.00
b = 180.538β = 90.00
c = 391.626γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata scaling
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan--

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release