5WSZ | pdb_00005wsz

Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis

• PDB DOI: https://doi.org/10.2210/pdb5WSZ/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Bacillus thuringiensis serovar kurstaki
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2016-12-08 Released: 2017-02-22 
• Deposition Author(s): Zhao, Y., Zhang, H., Yin, H.
• Funding Organization(s): National Natural Science Foundation of China

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free: 
  0.250 (Depositor), 0.250 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.206 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a lytic polysaccharide monooxygenase,BtLPMO10A, from Bacillus thuringiensis

Zhao, Y., Zhang, H., Yin, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 74.75 kDa 
• Atom Count: 5,378 
• Modelled Residue Count: 673 
• Deposited Residue Count: 676 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
LpmO10A	A, B, C, D	169	Bacillus thuringiensis serovar kurstaki	Mutation(s): 0  Gene Names: lpmO10A
UniProt
Find proteins for A0A0C5K362 (Bacillus thuringiensis subsp. kurstaki) Explore A0A0C5K362  Go to UniProtKB:  A0A0C5K362

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CU	E [auth A], F [auth B], G [auth C], H [auth D]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.56 Å
• R-Value Free:  0.250 (Depositor), 0.250 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.206 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.021	α = 90
b = 73.446	β = 90
c = 113.583	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Coot	model building
PHENIX	phasing
HKL-3000	data processing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2017-02-22 
Deposition Author(s): Zhao, Y., Zhang, H., Yin, H.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	31300668

Revision History  

• Version 1.0: 2017-02-22
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description
• Version 1.2: 2024-10-30
  Changes: Structure summary