5WSO | pdb_00005wso

crystal structure of BVDV NS3 helicase

PDB DOI: https://doi.org/10.2210/pdb5WSO/pdb

Classification: HYDROLASE
Organism(s): Bovine viral diarrhea virus 1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-08 Released: 2017-12-13
Deposition Author(s): Li, P., Shi, J., Wang, S., Li, S., Mao, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.82 Å
R-Value Free:
0.298 (Depositor), 0.299 (DCC)
R-Value Work:
0.272 (Depositor), 0.272 (DCC)
R-Value Observed:
0.273 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5WSO

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of BVDV NS3 helicase

Li, P., Shi, J., Wang, S., Li, S., Mao, X.

To be published.

Macromolecule Content

Total Structure Weight: 159.86 kDa
Atom Count: 9,452
Modeled Residue Count: 1,186
Deposited Residue Count: 1,428
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NS3 helicase	A, B, C	476	Bovine viral diarrhea virus 1	Mutation(s): 0
UniProt
Find proteins for P19711 (Bovine viral diarrhea virus (isolate NADL)) Explore P19711 Go to UniProtKB: P19711
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P19711
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.82 Å
R-Value Free: 0.298 (Depositor), 0.299 (DCC)
R-Value Work: 0.272 (Depositor), 0.272 (DCC)
R-Value Observed: 0.273 (Depositor)

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 121.1	α = 90
b = 121.1	β = 90
c = 109.721	γ = 120

Software Package:

Software Name	Purpose
Blu-Ice	data collection
SCALA	data scaling
PHASER	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
Coot	model building

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2017-12-13

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-12-13
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.