5WSO | pdb_00005wso

crystal structure of BVDV NS3 helicase

• PDB DOI: https://doi.org/10.2210/pdb5WSO/pdb

• Classification: HYDROLASE
• Organism(s): Bovine viral diarrhea virus 1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-12-08 Released: 2017-12-13 
• Deposition Author(s): Li, P., Shi, J., Wang, S., Li, S., Mao, X.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.82 Å
• R-Value Free: 
  0.298 (Depositor), 0.300 (DCC) 
• R-Value Work: 
  0.272 (Depositor), 0.270 (DCC) 
• R-Value Observed: 
  0.273 (Depositor) 

Literature

Crystal structure of BVDV NS3 helicase

Li, P., Shi, J., Wang, S., Li, S., Mao, X.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 159.86 kDa 
• Atom Count: 9,452 
• Modeled Residue Count: 1,186 
• Deposited Residue Count: 1,428 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NS3 helicase	A, B, C	476	Bovine viral diarrhea virus 1	Mutation(s): 0
UniProt
Find proteins for P19711 (Bovine viral diarrhea virus (isolate NADL)) Explore P19711  Go to UniProtKB:  P19711

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.82 Å
• R-Value Free:  0.298 (Depositor), 0.300 (DCC) 
• R-Value Work:  0.272 (Depositor), 0.270 (DCC) 
• R-Value Observed: 0.273 (Depositor) 

Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 121.1	α = 90
b = 121.1	β = 90
c = 109.721	γ = 120

Software Package:

Software Name	Purpose
Blu-Ice	data collection
SCALA	data scaling
PHASER	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-12-13 
Deposition Author(s): Li, P., Shi, J., Wang, S., Li, S., Mao, X.

Revision History  

• Version 1.0: 2017-12-13
  Type: Initial release
  
• Version 1.1: 2024-03-20
  Changes: Data collection, Database references