5WNO

Crystal structure of C. elegans LET-23 kinase domain complexed with AMP-PNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.386 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Regulation of Kinase Activity in the Caenorhabditis elegans EGF Receptor, LET-23.

Liu, L.Thaker, T.M.Freed, D.M.Frazier, N.Malhotra, K.Lemmon, M.A.Jura, N.

(2018) Structure 26: 270-281.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Receptor tyrosine-protein kinase let-23
A
330Caenorhabditis elegansMutation(s): 0 
Gene Names: let-23 (kin-7)
EC: 2.7.10.1
Find proteins for P24348 (Caenorhabditis elegans)
Go to UniProtKB:  P24348
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ANP
Query on ANP

Download SDF File 
Download CCD File 
A
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.386 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.215 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.097α = 90.00
b = 77.978β = 90.00
c = 106.207γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
PHENIXrefinement
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM109176
Susan G. Komen FoundationUnited StatesCCR14299947
National Institutes of Health/National Cancer InstituteUnited StatesF32CA216928

Revision History 

  • Version 1.0: 2018-01-31
    Type: Initial release
  • Version 1.1: 2018-04-18
    Type: Data collection, Database references