5WKZ

VH1-69 germline antibody predicted from CR6261

  • Classification: IMMUNE SYSTEM
  • Expression System: Trichoplusia ni

  • Deposited: 2017-07-25 Released: 2018-08-01 
  • Deposition Author(s): Lang, S., Lee, P.S.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Anti-idiotypic antibody K1-18 engages VH1-69 precursor and affinity-matured, anti-stem antibodies through mimicry of the HA stem

Wilson, I.A.Lang, S.Kurosawa, Y.Ohshima, N.Ota, T.Abadejos, J.Lee, P.S.Nemazee, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Immunoglobulin heavy variable 1-69D,IgG H chain
H
250N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Lambda-chain (AA -20 to 215)
L
217N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
H
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.232 
  • R-Value Work: 0.205 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 84.233α = 90.00
b = 84.233β = 90.00
c = 177.544γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
SCALEPACKdata scaling
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-07-25 
  • Released Date: 2018-08-01 
  • Deposition Author(s): Lang, S., Lee, P.S.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR56 AI 117675

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release