5WEC | pdb_00005wec

Structure of an alternative pilotin from the type II secretion system of Vibrio cholerae

PDB DOI: https://doi.org/10.2210/pdb5WEC/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Vibrio cholerae O395
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-07-08 Released: 2018-07-11
Deposition Author(s): Williamson, Z.A., Reed, R.W., Korotkov, K.V.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.56 Å
R-Value Free:
0.209 (Depositor), 0.212 (DCC)
R-Value Work:
0.182 (Depositor), 0.187 (DCC)
R-Value Observed:
0.183 (Depositor)

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This is version 1.2 of the entry. See complete history.

Literature

Structure and function of a new pilotin from the type II secretion system of Vibrio cholerae

Williamson, Z.A., Reed, R.W., Korotkov, K.V.

To be published.

Macromolecule Content

Total Structure Weight: 25.75 kDa
Atom Count: 1,992
Modeled Residue Count: 225
Deposited Residue Count: 234
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lipoprotein	A, B	117	Vibrio cholerae O395	Mutation(s): 0 Gene Names: VC0395_A0582
UniProt
Find proteins for A0A0H3AJJ8 (Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)) Explore A0A0H3AJJ8 Go to UniProtKB: A0A0H3AJJ8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3AJJ8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.56 Å
R-Value Free: 0.209 (Depositor), 0.212 (DCC)
R-Value Work: 0.182 (Depositor), 0.187 (DCC)
R-Value Observed: 0.183 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.89	α = 90
b = 60.12	β = 90
c = 73.83	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2018-07-11

Deposition Author(s):

Williamson, Z.A.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P30GM110787

Revision History (Full details and data files)

Version 1.0: 2018-07-11
Type: Initial release
Version 1.1: 2020-01-01
Changes: Author supporting evidence
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.