5WA6

Crystal structure of the influenza virus PA endonuclease in complex with an inhibitor - SRI-30007


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.231 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the influenza virus PA endonuclease in complex with an inhibitor - SRI-30007

Kumar, G.White, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polymerase acidic protein
A
197Influenza A virus (strain swl A/California/04/2009 H1N1)Mutation(s): 0 
Gene Names: PA
EC: 3.1.-.-
Find proteins for C3W5S0 (Influenza A virus (strain swl A/California/04/2009 H1N1))
Go to UniProtKB:  C3W5S0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
KU7
Query on KU7

Download SDF File 
Download CCD File 
A
2-{(2S)-1-[(2-fluorophenoxy)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide
C25 H25 F N4 O6
JUQCRNPUGAGYNP-SFHVURJKSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.254 
  • R-Value Work: 0.231 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 90.563α = 90.00
b = 90.563β = 90.00
c = 135.167γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHASERphasing
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-06-25 
  • Released Date: 2018-05-02 
  • Deposition Author(s): Kumar, G., White, S.W.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR01AI098757
St. Jude Children's Research HospitalUnited States--
ALSACUnited States--

Revision History 

  • Version 1.0: 2018-05-02
    Type: Initial release