5W7Z

Crystal structure of DNA polymerase III subunit beta from Rickettsia conorii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.186 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of DNA polymerase III subunit beta from Rickettsia conorii

Bowatte, K.Conrady, D.G.Abendroth, J.Lorimer, D.D.Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA polymerase III subunit beta
A, B
387Rickettsia conorii (strain ATCC VR-613 / Malish 7)Mutation(s): 0 
Gene Names: dnaN
Find proteins for Q92I37 (Rickettsia conorii (strain ATCC VR-613 / Malish 7))
Go to UniProtKB:  Q92I37
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MRD
Query on MRD

Download SDF File 
Download CCD File 
A
(4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 76.520α = 90.00
b = 86.910β = 115.39
c = 79.510γ = 90.00
Software Package:
Software NamePurpose
MoRDaphasing
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHENIXrefinement
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-07-26
    Type: Initial release
  • Version 1.1: 2017-10-11
    Type: Derived calculations