5W7A
Rabbit acyloxyacyl hydrolase (AOAH), proteolytically processed, S262A mutant, with LPS (low quality saposin domain)
- PDB DOI: https://doi.org/10.2210/pdb5W7A/pdb
- Classification: HYDROLASE
- Organism(s): Oryctolagus cuniculus
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes 
- Membrane Protein: Yes  OPM
- Deposited: 2017-06-19 Released: 2018-01-03 
- Funding Organization(s): Canadian Institutes of Health Research (CIHR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.262 
- R-Value Work: 0.240 
- R-Value Observed: 0.241 
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Acyloxyacyl hydrolase small subunit | 141 | Oryctolagus cuniculus | Mutation(s): 0  Gene Names: AOAH EC: 3.1.1.77 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for O18823 (Oryctolagus cuniculus) Explore O18823  Go to UniProtKB:  O18823 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O18823 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Acyloxyacyl hydrolase large subunit | 422 | Oryctolagus cuniculus | Mutation(s): 1  Gene Names: AOAH EC: 3.1.1.77 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for O18823 (Oryctolagus cuniculus) Explore O18823  Go to UniProtKB:  O18823 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O18823 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
P6G Query on P6G | I [auth B] | HEXAETHYLENE GLYCOL C12 H26 O7 IIRDTKBZINWQAW-UHFFFAOYSA-N | |||
FTT (Subject of Investigation/LOI) Query on FTT | J [auth B] | 3-HYDROXY-TETRADECANOIC ACID C14 H28 O3 ATRNZOYKSNPPBF-CYBMUJFWSA-N | |||
NAG Query on NAG | G [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
PO4 (Subject of Investigation/LOI) Query on PO4 | H [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
CA (Subject of Investigation/LOI) Query on CA | D [auth B], E [auth B], F [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.262 
- R-Value Work: 0.240 
- R-Value Observed: 0.241 
- Space Group: C 2 2 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 89.578 | α = 90 |
b = 123.199 | β = 90 |
c = 125.918 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
AutoSol | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2018-01-03  Deposition Author(s): Gorelik, A., Illes, K., Nagar, B.
Funding Organization | Location | Grant Number |
---|---|---|
Canadian Institutes of Health Research (CIHR) | Canada | MOP-133535 |
Revision History (Full details and data files)
- Version 1.0: 2018-01-03
Type: Initial release - Version 1.1: 2018-01-17
Changes: Database references - Version 1.2: 2018-01-31
Changes: Database references - Version 1.3: 2018-02-14
Changes: Database references - Version 1.4: 2020-01-08
Changes: Author supporting evidence - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Derived calculations, Structure summary