5W26
INFLUENZA VIRUS NEURAMINIDASE N9 IN COMPLEX WITH 4-DEOXYGENATED 2,3-DIFLUORO-N-ACETYLNEURAMINIC ACID
- PDB DOI: https://doi.org/10.2210/pdb5W26/pdb
- Classification: hydrolase/hydrolase inhibitor
- Organism(s): Influenza A virus (A/tern/Australia/G70C/1975(H11N9))
- Expression System: Trichoplusia ni
- Mutation(s): No 
- Deposited: 2017-06-05 Released: 2018-02-21 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.177 
- R-Value Work: 0.136 
- R-Value Observed: 0.139 
This is version 2.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Neuraminidase | 388 | Influenza A virus (A/tern/Australia/G70C/1975(H11N9)) | Mutation(s): 0  Gene Names: NA EC: 3.2.1.18 | ||
UniProt | |||||
Find proteins for P03472 (Influenza A virus (strain A/Tern/Australia/G70C/1975 H11N9)) Explore P03472  Go to UniProtKB:  P03472 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03472 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 8 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G83582BK GlyCosmos:  G83582BK GlyGen:  G83582BK |
Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
9SG Query on 9SG | D [auth A] | (2R,3R,5R,6R)-5-acetamido-2,3-bis(fluoranyl)-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid C11 H17 F2 N O7 AHSNGFVNAWRJGS-WNBQUBFESA-N | |||
9VP Query on 9VP | H [auth A] | 5-acetamido-2,6-anhydro-3,4,5-trideoxy-3-fluoro-D-erythro-L-gluco-nononic acid C11 H18 F N O7 AUOXJUOLLXNWIV-MMDZMLKVSA-N | |||
9WM Query on 9WM | G [auth A] | (2~{R},3~{R},5~{R})-3-acetamido-5-fluoranyl-2-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]-2,3,4,5-tetrahydropyran-1-ium-6-carboxylic acid C11 H17 F N O7 JMALISIZGRCKCG-VRRGKTLJSA-O | |||
NAG Query on NAG | E [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA Query on CA | F [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.177 
- R-Value Work: 0.136 
- R-Value Observed: 0.139 
- Space Group: I 4 3 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 180.94 | α = 90 |
b = 180.94 | β = 90 |
c = 180.94 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data processing |
MOLREP | phasing |
XFIT | model building |
Entry History 
Deposition Data
- Released Date: 2018-02-21  Deposition Author(s): Streltsov, V.A., Mckimm-Breschkin, J., Barrett, S., Pilling, P., Hader, S., Watt, A.G.
Revision History (Full details and data files)
- Version 1.0: 2018-02-21
Type: Initial release - Version 1.1: 2018-03-21
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2020-10-21
Changes: Data collection, Derived calculations, Structure summary - Version 2.2: 2023-10-04
Changes: Data collection, Database references, Refinement description