5W19

Tryptophan indole-lyase complex with oxindolyl-L-alanine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.217 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

The crystal structure of Proteus vulgaris tryptophan indole-lyase complexed with oxindolyl-L-alanine: implications for the reaction mechanism.

Phillips, R.S.Buisman, A.A.Choi, S.Hussaini, A.Wood, Z.A.

(2018) Acta Crystallogr D Struct Biol 74: 748-759


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tryptophanase
A, B, C, D
467Proteus vulgarisMutation(s): 0 
Gene Names: tnaA
EC: 4.1.99.1
Find proteins for P28796 (Proteus vulgaris)
Go to UniProtKB:  P28796
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A, C
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
9TD
Query on 9TD

Download SDF File 
Download CCD File 
A, B, C, D
1-carboxy-1-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]azaniumyl}-2-[(3R)-2-oxo-2,3-dihydro-1H-indol-3-yl]ethan-1-ide
C19 H20 N3 O8 P
QWYZKAZTPCEUQJ-CYBMUJFWSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.217 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 62.117α = 90.00
b = 152.081β = 90.00
c = 211.363γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-06-06
    Type: Initial release
  • Version 1.1: 2018-12-19
    Type: Data collection, Database references