5VZ6

HIV Reverse Transcriptase complexed with (E)-3-(pyrimidin-2-yl)-N-(5-(5,6,7,8-tetrahydronaphthalen-2-yl)-1H-pyrazol-3-yl)acrylamide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

HIV Reverse Transcriptase complexed with inhibitor

Yan, Y.Su, H.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV Reverse Transcriptase
A
563Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: pol
Find proteins for A7YKL0 (Human immunodeficiency virus 1)
Go to UniProtKB:  A7YKL0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HIV Reverse Transcriptase
B
443Human immunodeficiency virus 1Mutation(s): 0 
Gene Names: pol
Find proteins for A7YKL0 (Human immunodeficiency virus 1)
Go to UniProtKB:  A7YKL0
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9TV
Query on 9TV

Download SDF File 
Download CCD File 
A
3-(pyrimidin-2-yl)-N-[3-(5,6,7,8-tetrahydronaphthalen-2-yl)-1H-pyrazol-5-yl]propanamide
C20 H21 N5 O
YOAVNWPBYNWYQZ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.221 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 118.080α = 90.00
b = 154.710β = 90.00
c = 155.990γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
BUSTERphasing
BUSTERrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-05-26 
  • Released Date: 2018-05-30 
  • Deposition Author(s): Yan, Y., Su, H.P.

Revision History 

  • Version 1.0: 2018-05-30
    Type: Initial release