5VZ2

Structure of ClpP from Staphylococcus aureus in complex with Acyldepsipeptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.179 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Design and Synthesis of Urea Depsipeptides as ClpP Activators

Griffith, E.C.Lee, R.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ATP-dependent Clp protease proteolytic subunit
A, B, C, D, E, F, G, I, K, L, M, N, S, T
203Staphylococcus aureus (strain NCTC 8325)Mutation(s): 0 
Gene Names: clpP
EC: 3.4.21.92
Find proteins for Q2G036 (Staphylococcus aureus (strain NCTC 8325))
Go to UniProtKB:  Q2G036
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Acyldepsipeptide
H, J, O, P, Q, R, U, V, X, Y, Z, a, b, c
7N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Biologically Interesting Molecules 1 Unique
IDChainsNameType/Class2D Diagram3D Interactions
PRD_002274
Query on PRD_002274
a,b,c,H,J,O,P,Q,R,U,V,X,Y,ZAcyldepsipeptide 9TS-PHE-SER-PRO-YCP-ALA-MP8Cyclic depsipeptide / Antibiotic

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.26 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.179 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 94.562α = 90.00
b = 126.131β = 93.42
c = 145.794γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHASERphasing
MAR345dtbdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited States5R01AI110578-04

Revision History 

  • Version 1.0: 2017-06-21
    Type: Initial release
  • Version 1.1: 2017-09-27
    Type: Author supporting evidence