5VTL | pdb_00005vtl

Structure of metacyclic invariant surface protein , Tb427.07.360, from Trypanosoma brucei.

PDB DOI: https://doi.org/10.2210/pdb5VTL/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Trypanosoma brucei
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-05-17 Released: 2018-08-08
Deposition Author(s): Ramswamy, R., Workman, S.D., Boulanger, M.J.
Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.82 Å
R-Value Free:
0.204 (Depositor), 0.205 (DCC)
R-Value Work:
0.169 (Depositor), 0.171 (DCC)
R-Value Observed:
0.171 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 5VTL

This is version 1.3 of the entry. See complete history.

Literature

Structure of Tb427.07.360, an insect stage antigen from Trypanosoma brucei.

Ramswamy, R., Workman, S.D., Boulanger, M.J.

To be published.

Macromolecule Content

Total Structure Weight: 22.09 kDa
Atom Count: 1,819
Modeled Residue Count: 210
Deposited Residue Count: 210
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tb427.07.360- putative uncharacterized metacyclic invariant surface protein from Trypanosoma brucei	A	210	Trypanosoma brucei	Mutation(s): 0
UniProt
Find proteins for A0A3F2YLN4 (Trypanosoma brucei) Explore A0A3F2YLN4 Go to UniProtKB: A0A3F2YLN4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A3F2YLN4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.82 Å
R-Value Free: 0.204 (Depositor), 0.205 (DCC)
R-Value Work: 0.169 (Depositor), 0.171 (DCC)
R-Value Observed: 0.171 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 24.81	α = 90
b = 79.5	β = 90
c = 108.17	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2018-08-08

Deposition Author(s):

Boulanger, M.J.

Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	--

Revision History (Full details and data files)

Version 1.0: 2018-08-08
Type: Initial release
Version 1.1: 2020-01-08
Changes: Author supporting evidence
Version 1.2: 2023-10-04
Changes: Data collection, Database references, Refinement description
Version 1.3: 2024-10-23
Changes: Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.