5VOV | pdb_00005vov

Structure of AMPA receptor-TARP complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.7 of the entry. See complete history

Literature

Activation and Desensitization Mechanism of AMPA Receptor-TARP Complex by Cryo-EM.

Chen, S.Zhao, Y.Wang, Y.Shekhar, M.Tajkhorshid, E.Gouaux, E.

(2017) Cell 170: 1234-1246.e14

  • DOI: https://doi.org/10.1016/j.cell.2017.07.045
  • Primary Citation Related Structures: 
    5VOT, 5VOU, 5VOV

  • PubMed Abstract: 

    AMPA receptors mediate fast excitatory neurotransmission in the mammalian brain and transduce the binding of presynaptically released glutamate to the opening of a transmembrane cation channel. Within the postsynaptic density, however, AMPA receptors coassemble with transmembrane AMPA receptor regulatory proteins (TARPs), yielding a receptor complex with altered gating kinetics, pharmacology, and pore properties. Here, we elucidate structures of the GluA2-TARP γ2 complex in the presence of the partial agonist kainate or the full agonist quisqualate together with a positive allosteric modulator or with quisqualate alone. We show how TARPs sculpt the ligand-binding domain gating ring, enhancing kainate potency and diminishing the ensemble of desensitized states. TARPs encircle the receptor ion channel, stabilizing M2 helices and pore loops, illustrating how TARPs alter receptor pore properties. Structural and computational analysis suggests the full agonist and modulator complex harbors an ion-permeable channel gate, providing the first view of an activated AMPA receptor.


  • Organizational Affiliation
    • Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA.

Macromolecule Content 

  • Total Structure Weight: 541.88 kDa 
  • Atom Count: 15,048 
  • Modeled Residue Count: 2,274 
  • Deposited Residue Count: 4,848 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Glutamate receptor 2
A, B, C, D
889Rattus norvegicusMutation(s): 0 
Gene Names: Gria2Glur2
Membrane Entity: Yes 
UniProt
Find proteins for P19491 (Rattus norvegicus)
Explore P19491 
Go to UniProtKB:  P19491
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19491
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Voltage-dependent calcium channel gamma-2 subunit
E, F, G, H
323Rattus norvegicusMutation(s): 0 
Gene Names: Cacng2Stg
Membrane Entity: Yes 
UniProt
Find proteins for Q71RJ2 (Rattus norvegicus)
Explore Q71RJ2 
Go to UniProtKB:  Q71RJ2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ71RJ2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 7.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesNS-038631

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-12
    Type: Initial release
  • Version 1.1: 2017-09-20
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2017-10-04
    Changes: Database references
  • Version 1.3: 2017-11-08
    Changes: Derived calculations
  • Version 1.4: 2018-07-18
    Changes: Data collection
  • Version 1.5: 2019-11-06
    Changes: Data collection, Other, Structure summary
  • Version 1.6: 2019-12-18
    Changes: Author supporting evidence
  • Version 1.7: 2024-10-30
    Changes: Data collection, Database references, Structure summary