5VL9

Crystal structure of EilR in complex with eilO DNA element


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.194 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Jungle Express is a versatile repressor system for tight transcriptional control.

Ruegg, T.L.Pereira, J.H.Chen, J.C.DeGiovanni, A.Novichkov, P.Mutalik, V.K.Tomaleri, G.P.Singer, S.W.Hillson, N.J.Simmons, B.A.Adams, P.D.Thelen, M.P.

(2018) Nat Commun 9: 3617-3617


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Regulatory protein TetR
A, B, C, D
192Enterobacter lignolyticus (strain SCF1)Mutation(s): 0 
Gene Names: eilR
Find proteins for E3G817 (Enterobacter lignolyticus (strain SCF1))
Go to UniProtKB:  E3G817
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*AP*TP*GP*TP*CP*CP*AP*AP*CP*TP*TP*TP*C)-3')E,G14[Enterobacter] lignolyticus
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*AP*AP*AP*GP*TP*TP*GP*GP*AP*CP*AP*TP*A)-3')F,H14[Enterobacter] lignolyticus
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HEZ
Query on HEZ

Download SDF File 
Download CCD File 
A, B, C, D
HEXANE-1,6-DIOL
C6 H14 O2
XXMIOPMDWAUFGU-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.194 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 54.790α = 116.80
b = 74.060β = 105.19
c = 81.360γ = 90.78
Software Package:
Software NamePurpose
AutoSolphasing
PHENIXrefinement
xia2data reduction
xia2data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy - DOEUnited StatesDE-AC02-05CH11231

Revision History 

  • Version 1.0: 2018-06-27
    Type: Initial release
  • Version 1.1: 2018-11-28
    Type: Data collection, Database references