5VHE

DHX36 in complex with the c-Myc G-quadruplex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.793 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.238 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36.

Chen, M.C.Tippana, R.Demeshkina, N.A.Murat, P.Balasubramanian, S.Myong, S.Ferre-D'Amare, A.R.

(2018) Nature 558: 465-469


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DEAH (Asp-Glu-Ala-His) box polypeptide 36
A
933Bos taurusMutation(s): 0 
Gene Names: DHX36
EC: 3.6.4.12, 3.6.4.13
Find proteins for Q05B79 (Bos taurus)
Go to Gene View: DHX36
Go to UniProtKB:  Q05B79
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*TP*TP*TP*TP*TP*T)-3')B24Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
B
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.793 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.238 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 72.526α = 90.00
b = 79.282β = 90.00
c = 212.077γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-06-13
    Type: Initial release
  • Version 1.1: 2018-06-27
    Type: Data collection, Database references
  • Version 1.2: 2018-07-04
    Type: Data collection, Database references