5VGC

Crystal structure of the NleG5-1 effector (C200A) from Escherichia coli O157:H7 str. Sakai


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.245 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of the NleG5-1 effector (C200A) from Escherichia coli O157:H7 str. Sakai

Valleau, D.Little, D.Borek, D.Skarina, T.Quaile, A.T.Di Leo, R.Houliston, S.Lemak, A.Arrowsmith, C.Combes, B.Savchenko, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NleG5-1 effector
A, B
214Enterobacteria phage YYZ-2008Mutation(s): 1 
Find proteins for B6DZC0 (Enterobacteria phage YYZ-2008)
Go to UniProtKB:  B6DZC0
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.245 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 151.376α = 90.00
b = 151.376β = 90.00
c = 87.983γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-3000data reduction
REFMACrefinement
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesContract No. HHSN272201200026C

Revision History 

  • Version 1.0: 2018-04-18
    Type: Initial release
  • Version 1.1: 2019-02-20
    Type: Author supporting evidence, Data collection
  • Version 1.2: 2019-12-11
    Type: Author supporting evidence