5VC8

Crystal structure of the WHSC1 PWWP1 domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the WHSC1 PWWP1 domain

Qin, S.Tempel, W.Dong, A.Bountra, C.Weigelt, J.Arrowsmith, C.H.Edwards, A.M.Min, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone-lysine N-methyltransferase NSD2
A, B
141Homo sapiensGene Names: WHSC1 (KIAA1090, MMSET, NSD2, TRX5)
EC: 2.1.1.43
Find proteins for O96028 (Homo sapiens)
Go to UniProtKB:  O96028
Entity ID: 2
MoleculeChainsLengthOrganism
dodeca-2-deoxy-nucleotide, poorly resolved by electron densityW,X,Y12synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*TP*(DN))-3')Z3synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A, B
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
DN
Query on DN
Z
DNA LINKINGC5 H11 O6 P

--

MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 82.990α = 90.00
b = 82.990β = 90.00
c = 115.400γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
Aimlessdata scaling
PHENIXrefinement
xia2data reduction
XDSdata reduction
SHELXDEphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-06-28
    Type: Initial release