5VBJ

Sulfur as a bromine biomolecular halogen-bond acceptor

  • Classification: DNA
  • Organism(s): synthetic construct

  • Deposited: 2017-03-29 Released: 2017-08-09 
  • Deposition Author(s): Ford, M.C., Ho, P.S.
  • Funding Organization(s): National Science Foundation (United States) 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.944 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.218 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure-energy relationships of sulfur as a bromine halogen-bond acceptor

Ford, M.C.Ho, P.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*CP*GP*AP*TP*(AS)P*(BRU)P*CP*GP*G)-3')A,B10synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
BRU
Query on BRU
A, B
DNA LINKINGC9 H12 Br N2 O8 PDU
AS
Query on AS
A, B
DNA LINKINGC10 H14 N5 O5 P SDA
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.944 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.218 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 64.165α = 90.00
b = 23.981β = 112.32
c = 37.815γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
HKL-2000data reduction
HKL-3000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-03-29 
  • Released Date: 2017-08-09 
  • Deposition Author(s): Ford, M.C., Ho, P.S.

Funding OrganizationCountryGrant Number
National Science Foundation (United States)United States5351441

Revision History 

  • Version 1.0: 2017-08-09
    Type: Initial release