5VAO

Crystal structure of eVP30 C-terminus and eNP peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Ebola virus VP30 and nucleoprotein interactions modulate viral RNA synthesis.

Xu, W.Luthra, P.Wu, C.Batra, J.Leung, D.W.Basler, C.F.Amarasinghe, G.K.

(2017) Nat Commun 8: 15576-15576

  • DOI: 10.1038/ncomms15576
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Ebola virus (EBOV) is an enveloped negative-sense RNA virus that causes sporadic outbreaks with high case fatality rates. Ebola viral protein 30 (eVP30) plays a critical role in EBOV transcription initiation at the nucleoprotein (eNP) gene, with addi ...

    Ebola virus (EBOV) is an enveloped negative-sense RNA virus that causes sporadic outbreaks with high case fatality rates. Ebola viral protein 30 (eVP30) plays a critical role in EBOV transcription initiation at the nucleoprotein (eNP) gene, with additional roles in the replication cycle such as viral assembly. However, the mechanistic basis for how eVP30 functions during the virus replication cycle is currently unclear. Here we define a key interaction between eVP30 and a peptide derived from eNP that is important to facilitate interactions leading to the recognition of the RNA template. We present crystal structures of the eVP30 C-terminus in complex with this eNP peptide. Functional analyses of the eVP30-eNP interface identify residues that are critical for viral RNA synthesis. Altogether, these results support a model where the eVP30-eNP interaction plays a critical role in transcription initiation and provides a novel target for the development of antiviral therapy.


    Organizational Affiliation

    Department of Pathology and Immunology, Washington University School of Medicine, St Louis, Missouri 63105, USA.,Center for Microbial Pathogenesis, Institute for Biomedical Sciences, Georgia State University, Atlanta, Georgia 30303, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Minor nucleoprotein VP30
A, B, C, D
129Zaire ebolavirus (strain Kikwit-95)Mutation(s): 0 
Gene Names: VP30
Find proteins for Q77DJ5 (Zaire ebolavirus (strain Kikwit-95))
Go to UniProtKB:  Q77DJ5
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NP
E, F, G, H
11Zaire ebolavirus (strain Kikwit-95)Mutation(s): 0 
Gene Names: NP
Find proteins for O72142 (Zaire ebolavirus (strain Kikwit-95))
Go to UniProtKB:  O72142
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

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B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
B, C, D
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

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Download CCD File 
D
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

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Download CCD File 
B, C, D, E
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.183 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 139.478α = 90.00
b = 139.478β = 90.00
c = 161.467γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-06-21
    Type: Initial release