5V8I

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.226 
  • R-Value Observed: 0.228 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural robustness of the ribosome inferred from X-ray crystal structures of the 30S ribosomal subunit and the 70S ribosome lacking ribosomal protein uS17

Murphy, E.Connetti, J.L.Dahlberg, A.E.Gregory, S.T.Jogl, G.

To be published.

Macromolecules

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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L2C [auth 1D],
CB [auth 2D]
276Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplBTT_C1325
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L3D [auth 1E],
DB [auth 2E]
206Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplCTT_C1328
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L4E [auth 1F],
EB [auth 2F]
210Thermus thermophilus HB27Mutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L5F [auth 1G],
FB [auth 2G]
182Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplETT_C1316
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L6G [auth 1H],
GB [auth 2H]
180Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplFTT_C1313
UniProt
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L9H [auth 1I],
HB [auth 2I]
148Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplITT_C1743
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L13I [auth 1N],
IB [auth 2N]
140Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplMTT_C1101
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L14J [auth 1O],
JB [auth 2O]
122Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplNTT_C1318
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L15K [auth 1P],
KB [auth 2P]
150Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplOTT_C1309
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L16L [auth 1Q],
LB [auth 2Q]
141Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplPTT_C1321
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L17M [auth 1R],
MB [auth 2R]
118Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplQTT_C1299
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L18N [auth 1S],
NB [auth 2S]
112Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplRTT_C1312
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L19O [auth 1T],
OB [auth 2T]
146Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplSTT_C0669
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L20P [auth 1U],
PB [auth 2U]
118Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplTTT_C0185
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L21Q [auth 1V],
QB [auth 2V]
101Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplUTT_C1424
UniProt
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L22R [auth 1W],
RB [auth 2W]
113Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplVTT_C1323
UniProt
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L23S [auth 1X],
SB [auth 2X]
96Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplWTT_C1326
UniProt
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L24T [auth 1Y],
TB [auth 2Y]
110Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplXTT_C1317
UniProt
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L25U [auth 1Z],
UB [auth 2Z]
206Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rplYctcTT_C1225
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L27V [auth 10],
VB [auth 20]
85Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmATT_C1423
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L28W [auth 11],
WB [auth 21]
98Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmBTT_C1964
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Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L29X [auth 12],
XB [auth 22]
72Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmCTT_C1320
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Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L30Y [auth 13],
YB [auth 23]
60Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmDTT_C1310
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Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L31Z [auth 14],
ZB [auth 24]
71Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmETT_C0708
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L32AA [auth 15],
AC [auth 25]
60Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmFrpl32TT_C0050
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L33BA [auth 16],
BC [auth 26]
54Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmGTT_C1735
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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L34CA [auth 17],
CC [auth 27]
49Thermus thermophilus HB27Mutation(s): 0 
UniProt
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L35DA [auth 18],
DC [auth 28]
65Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmITT_C0184
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
50S ribosomal protein L36EA [auth 19],
EC [auth 29]
37Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpmJTT_C1304
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S2GA [auth 1b],
GC [auth 2b]
256Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsBrps2TT_C0509
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S3HA [auth 1c],
HC [auth 2c]
239Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsCrps3TT_C1322
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Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S4IA [auth 1d],
IC [auth 2d]
209Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsDrps4TT_C1301
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Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S5JA [auth 1e],
JC [auth 2e]
162Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsErps5TT_C1311
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Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S6KA [auth 1f],
KC [auth 2f]
101Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsFrps6TT_C1740
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Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S7LA [auth 1g],
LC [auth 2g]
156Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsGrps7TT_C1332
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Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S8MA [auth 1h],
MC [auth 2h]
138Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsHrps8TT_C1314
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Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S9NA [auth 1i],
NC [auth 2i]
128Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsIrps9TT_C1100
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Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S10OA [auth 1j],
OC [auth 2j]
105Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsJrps10TT_C1329
UniProt
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Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S11PA [auth 1k],
PC [auth 2k]
129Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsKrps11TT_C1302
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Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S12QA [auth 1l],
QC [auth 2l]
135Thermus thermophilus HB27Mutation(s): 0 
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Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S13RA [auth 1m],
RC [auth 2m]
126Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsMrps13TT_C1303
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Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S14 type ZSA [auth 1n],
SC [auth 2n]
61Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsZrps14rpsNTT_C1315
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Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S15TA [auth 1o],
TC [auth 2o]
89Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsOrps15TT_C0773
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Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S16UA [auth 1p],
UC [auth 2p]
88Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsPrps16TT_C0673
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Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S18VA [auth 1r],
VC [auth 2r]
88Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsRrps18TT_C1742
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Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S19WA [auth 1s],
WC [auth 2s]
93Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsSrps19TT_C1324
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Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein S20XA [auth 1t],
XC [auth 2t]
106Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsTrps20TT_C1031
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Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
30S ribosomal protein ThxYA [auth 1u],
YC [auth 2u]
27Thermus thermophilus HB27Mutation(s): 0 
Gene Names: rpsUTT_C1030
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Entity ID: 52
MoleculeChainsSequence LengthOrganismDetailsImage
Ribosome-associated inhibitor AZA [auth 1y],
ZC [auth 2y]
113Escherichia coli K-12Mutation(s): 0 
Gene Names: raiAyfiAb2597JW2578
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Entity ID: 1
MoleculeChainsLengthOrganismImage
23S Ribosomal RNAA [auth 1A],
AB [auth 2A]
2894Thermus thermophilus HB27
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Entity ID: 2
MoleculeChainsLengthOrganismImage
5S Ribosomal RNAB [auth 1B],
BB [auth 2B]
120Thermus thermophilus HB27
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Entity ID: 32
MoleculeChainsLengthOrganismImage
16S Ribosomal RNAFA [auth 1a],
FC [auth 2a]
1522Thermus thermophilus HB27
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Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4

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EJC [auth 2d],
RAB [auth 1d]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
ARG
Query on ARG

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ONA [auth 1F],
RLA [auth 1B]
ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-BYPYZUCNSA-O
 Ligand Interaction
MPD
Query on MPD

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AD [auth 1A],
MAC [auth 2B],
OQA [auth 18],
SQA [auth 1a],
TBB [auth 2A],
AD [auth 1A],
MAC [auth 2B],
OQA [auth 18],
SQA [auth 1a],
TBB [auth 2A],
UBB [auth 2A],
YOA [auth 1T]
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
ZN
Query on ZN

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EQA [auth 14],
GQA [auth 15],
JQA [auth 16],
KBB [auth 1n],
KCC [auth 2Y],
EQA [auth 14],
GQA [auth 15],
JQA [auth 16],
KBB [auth 1n],
KCC [auth 2Y],
MJC [auth 2n],
QPA [auth 1Y],
QQA [auth 19],
RCC [auth 24],
SCC [auth 25],
TCC [auth 26],
VCC [auth 29]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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