5V77

Crystal structure of an uncharacterized protein from Neisseria gonorrhoeae

• PDB DOI: https://doi.org/10.2210/pdb5V77/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Neisseria gonorrhoeae
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2017-03-18 Released: 2017-04-12 
• Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.203 
• R-Value Work: 0.176 
• R-Value Observed: 0.178 

Literature

Crystal structure of an uncharacterized protein from Neisseria gonorrhoeae

Abendroth, J., Mayclin, S.J., Lorimer, D.D., Edwards, T.E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 26.69 kDa 
• Atom Count: 1,908 
• Modelled Residue Count: 210 
• Deposited Residue Count: 226 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	113	Neisseria gonorrhoeae	Mutation(s): 0  Gene Names:  WHOF_01246, WHOF_02176, WHOG_00626C, WHOG_02132, WHOK_01205, WHOK_01955, WHOL_01367, WHOL_02114, WHOM_00626C, WHOM_02114, WHON_00630C, WHON_02136, WHOO_00556C, WHOO_02142, WHOP_01206, WHOP_02014, WHOU_01273, WHOU_02060, WHOV_00617C, WHOV_01253, WHOW_01270, WHOW_02034, WHOX_00621C, WHOX_02014, WHOY_00665C, WHOY_02132, WHOZ_00621C, WHOZ_00669
UniProt
Find proteins for Q5F7U7 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5F7U7  Go to UniProtKB:  Q5F7U7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.85 Å
• R-Value Free: 0.203 
• R-Value Work: 0.176 
• R-Value Observed: 0.178 
• Space Group: P 6₅ 2 2
• Diffraction Data: https://doi.org/10.18430/M35V77

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 107.36	α = 90
b = 107.36	β = 90
c = 87.79	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
ARP	model building
Coot	model building
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-04-12 
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History  

• Version 1.0: 2017-04-12
  Type: Initial release
  
• Version 1.1: 2024-03-06
  Changes: Data collection, Database references