5V77 | pdb_00005v77

Crystal structure of an uncharacterized protein from Neisseria gonorrhoeae

PDB DOI: https://doi.org/10.2210/pdb5V77/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Neisseria gonorrhoeae
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-03-18 Released: 2017-04-12
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free:
0.203 (Depositor), 0.204 (DCC)
R-Value Work:
0.176 (Depositor), 0.178 (DCC)
R-Value Observed:
0.178 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5V77

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of an uncharacterized protein from Neisseria gonorrhoeae

Abendroth, J., Mayclin, S.J., Lorimer, D.D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 26.69 kDa
Atom Count: 1,908
Modeled Residue Count: 210
Deposited Residue Count: 226
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B	113	Neisseria gonorrhoeae	Mutation(s): 0 Gene Names: WHOF_01246, WHOF_02176, WHOG_00626C, WHOG_02132, WHOK_01205, WHOK_01955, WHOL_01367, WHOL_02114, WHOM_00626C, WHOM_02114... WHOF_01246, WHOF_02176, WHOG_00626C, WHOG_02132, WHOK_01205, WHOK_01955, WHOL_01367, WHOL_02114, WHOM_00626C, WHOM_02114, WHON_00630C, WHON_02136, WHOO_00556C, WHOO_02142, WHOP_01206, WHOP_02014, WHOU_01273, WHOU_02060, WHOV_00617C, WHOV_01253, WHOW_01270, WHOW_02034, WHOX_00621C, WHOX_02014, WHOY_00665C, WHOY_02132, WHOZ_00621C, WHOZ_00669
UniProt
Find proteins for Q5F7U7 (Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)) Explore Q5F7U7 Go to UniProtKB: Q5F7U7
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5F7U7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.85 Å
R-Value Free: 0.203 (Depositor), 0.204 (DCC)
R-Value Work: 0.176 (Depositor), 0.178 (DCC)
R-Value Observed: 0.178 (Depositor)

Diffraction Data:

Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 107.36	α = 90
b = 107.36	β = 90
c = 87.79	γ = 120

Software Package:

Software Name	Purpose
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
ARP	model building
Coot	model building
PHENIX	refinement

Structure Validation

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Entry History

Deposition Data

Released Date: 2017-04-12

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2017-04-12
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.