5V48

Soluble rabbit neprilysin in complex with thiorphan


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9965 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Soluble rabbit neprilysin in complex with thiorphan

Labiuk, S.L.Grochulski, P.Sygusch, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neprilysin
A, B
696Oryctolagus cuniculusMutation(s): 0 
Gene Names: MME
EC: 3.4.24.11
Find proteins for P08049 (Oryctolagus cuniculus)
Go to Gene View: MME
Go to UniProtKB:  P08049
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
TIO
Query on TIO

Download SDF File 
Download CCD File 
A, B
(2-MERCAPTOMETHYL-3-PHENYL-PROPIONYL)-GLYCINE
THIORPHAN
C12 H15 N O3 S
LJJKNPQAGWVLDQ-SNVBAGLBSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9965 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.195 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 68.994α = 90.00
b = 108.446β = 90.00
c = 211.887γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
DENZOdata reduction
DENZOdata collection
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (Canada)Canada--

Revision History 

  • Version 1.0: 2018-03-14
    Type: Initial release