5V3J

mouseZFP568-ZnF1-10 in complex with DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.064 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

mouseZFP568-ZnF1-10 in complex with DNA

Patel, A.Cheng, X.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Zinc finger protein 568
E, F
284Mus musculusMutation(s): 0 
Gene Names: Znf568 (chato, Zfp568)
Find proteins for E9PYI1 (Mus musculus)
Go to UniProtKB:  E9PYI1
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (26-MER)A,C26Mus
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (26-MER)B,D26Mus
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
E, F
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
E, F
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
TRS
Query on TRS

Download SDF File 
Download CCD File 
E, F
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.064 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.192 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 55.787α = 100.52
b = 65.706β = 104.25
c = 73.022γ = 97.25
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXphasing
HKL-2000data scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-03-07 
  • Released Date: 2018-03-07 
  • Deposition Author(s): Patel, A., Cheng, X.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM049245

Revision History 

  • Version 1.0: 2018-03-07
    Type: Initial release