5V01

Crystal structure of the competence damage-inducible protein A (ComA) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.161 
  • R-Value Work: 0.124 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the competence damage-inducible protein A (ComA) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Borek, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Competence damage-inducible protein A
A, B
173Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)Gene Names: ydeJ
Find proteins for A6T8V7 (Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578))
Go to UniProtKB:  A6T8V7
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CSO
Query on CSO

Download SDF File 
Download CCD File 
B
S-HYDROXYCYSTEINE
C3 H7 N O3 S
FXIRVRPOOYSARH-REOHCLBHSA-N
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 38.452α = 90.00
b = 90.433β = 103.75
c = 44.126γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
HKL-3000data scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human ServicesUnited StatesHHSN272201200026C
National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human ServicesUnited StatesHHSN272200700058C

Revision History 

  • Version 1.0: 2017-03-15
    Type: Initial release