5UXV

Crystal Structure of Anti-anti-sigma factor PhyR I40V/S51C mutant from Bartonella quintana

PDB DOI: https://doi.org/10.2210/pdb5UXV/pdb

Classification: SIGNALING PROTEIN
Organism(s): Bartonella quintana str. Toulouse
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2017-02-23 Released: 2018-02-28
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.237
R-Value Work: 0.194
R-Value Observed: 0.196

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Anti-anti-sigma factor PhyR I40V/S51C mutant from Bartonella quintana

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Dranow, D.M., Fairman, J.W., Lorimer, D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 59.43 kDa
Atom Count: 3,749
Modelled Residue Count: 484
Deposited Residue Count: 530
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sensory transduction regulatory protein	A, B	265	Bartonella quintana str. Toulouse	Mutation(s): 2 Gene Names: BQ10980
UniProt
Find proteins for A0A0M3KKV8 (Bartonella quintana (strain Toulouse)) Explore A0A0M3KKV8 Go to UniProtKB: A0A0M3KKV8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0M3KKV8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain C [auth B] SDF format, chain D [auth B] MOL2 format, chain C [auth B] MOL2 format, chain D [auth B]	C [auth B], D [auth B]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain C [auth B] Focus chain D [auth B] Interactions & Density Focus chain C [auth B] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.237
R-Value Work: 0.194
R-Value Observed: 0.196
Space Group: C 2 2 2₁
Diffraction Data: https://doi.org/10.18430/M35UXV

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.5	α = 90
b = 121.42	β = 90
c = 89.87	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing
XSCALE	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-02-28

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2018-02-28
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.