5US1

Crystal structure of aminoglycoside acetyltransferase AAC(2')-Ia in complex with N2'-acetylgentamicin C1A and coenzyme A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.48 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.187 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Plazomicin Retains Antibiotic Activity against Most Aminoglycoside Modifying Enzymes.

Cox, G.Ejim, L.Stogios, P.J.Koteva, K.Bordeleau, E.Evdokimova, E.Sieron, A.O.Savchenko, A.Serio, A.W.Krause, K.M.Wright, G.D.

(2018) ACS Infect Dis 4: 980-987


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aminoglycoside 2'-N-acetyltransferase
A, B, C, D, E, F, G, H, I, J, K, L
189Providencia stuartiiMutation(s): 0 
Gene Names: aac
EC: 2.3.1.59
Find proteins for Q52424 (Providencia stuartii)
Go to UniProtKB:  Q52424
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACO
Query on ACO

Download SDF File 
Download CCD File 
C
ACETYL COENZYME *A
C23 H38 N7 O17 P3 S
ZSLZBFCDCINBPY-ZSJPKINUSA-N
 Ligand Interaction
TAR
Query on TAR

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Download CCD File 
A, D, F, H, J
D(-)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-LWMBPPNESA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
C, I, K
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
COA
Query on COA

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Download CCD File 
E, I, L
COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
 Ligand Interaction
8MM
Query on 8MM

Download SDF File 
Download CCD File 
A, B, D, E, F, G, H, I, K, L
(1R,2S,3S,4R,6S)-4,6-diamino-3-{[3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranosyl]oxy}-2-hydroxycyclohexyl 2-(acetylamino)-6-amino-2,3,4,6-tetradeoxy-alpha-D-erythro-hexopyranoside
N2'-acetylgentamicin C1A
C21 H41 N5 O8
RLGSXXMFPPOROB-JOYMZIHVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 340.170α = 90.00
b = 340.170β = 90.00
c = 62.770γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
Cootmodel building
PHENIXrefinement
PHASERphasing
PHENIXmodel building
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesHHSCN27220120026C

Revision History 

  • Version 1.0: 2017-03-15
    Type: Initial release
  • Version 1.1: 2017-09-20
    Type: Author supporting evidence, Derived calculations
  • Version 1.2: 2018-04-25
    Type: Data collection, Database references
  • Version 1.3: 2018-06-20
    Type: Data collection, Database references