5UPR

X-ray structure of a putative triosephosphate isomerase from Toxoplasma gondii ME49


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

X-ray structure of a putative triosephosphate isomerase from Toxoplasma gondii ME49

Filippova, E.V.Wawrzak, Z.Minasov, G.Cardona-Correa, A.Bishop, B.Anderson, W.F.Ngo, H.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Triosephosphate isomerase
A, B, C, D
265Toxoplasma gondii (strain ATCC 50611 / Me49)Mutation(s): 0 
Gene Names: TPI-II
EC: 5.3.1.1
Find proteins for A0A125YP67 (Toxoplasma gondii (strain ATCC 50611 / Me49))
Go to UniProtKB:  A0A125YP67
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C, D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 56.368α = 90.00
b = 115.533β = 90.02
c = 78.719γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
Cootmodel building
PHENIXphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-02-22
    Type: Initial release
  • Version 1.1: 2017-07-19
    Type: Database references, Structure summary
  • Version 1.2: 2017-11-22
    Type: Refinement description