5UNG

XFEL structure of human angiotensin II type 2 receptor (Orthorhombic form) in complex with compound 1 (N-benzyl-N-(2-ethyl-4-oxo-3-{[2'-(2H-tetrazol-5-yl)[1,1'-biphenyl]-4-yl] methyl}-3,4-dihydroquinazolin-6-yl)thiophene-2-carboxamide)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.241 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis for selectivity and diversity in angiotensin II receptors.

Zhang, H.Han, G.W.Batyuk, A.Ishchenko, A.White, K.L.Patel, N.Sadybekov, A.Zamlynny, B.Rudd, M.T.Hollenstein, K.Tolstikova, A.White, T.A.Hunter, M.S.Weierstall, U.Liu, W.Babaoglu, K.Moore, E.L.Katz, R.D.Shipman, J.M.Garcia-Calvo, M.Sharma, S.Sheth, P.Soisson, S.M.Stevens, R.C.Katritch, V.Cherezov, V.

(2017) Nature 544: 327-332

  • DOI: 10.1038/nature22035
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The angiotensin II receptors AT <sub>1 </sub>R and AT <sub>2 </sub>R serve as key components of the renin-angiotensin-aldosterone system. AT <sub>1 </sub>R has a central role in the regulation of blood pressure, but the function of AT <sub>2 </sub>R ...

    The angiotensin II receptors AT 1 R and AT 2 R serve as key components of the renin-angiotensin-aldosterone system. AT 1 R has a central role in the regulation of blood pressure, but the function of AT 2 R is unclear and it has a variety of reported effects. To identify the mechanisms that underlie the differences in function and ligand selectivity between these receptors, here we report crystal structures of human AT 2 R bound to an AT 2 R-selective ligand and to an AT 1 R/AT 2 R dual ligand, capturing the receptor in an active-like conformation. Unexpectedly, helix VIII was found in a non-canonical position, stabilizing the active-like state, but at the same time preventing the recruitment of G proteins or ╬▓-arrestins, in agreement with the lack of signalling responses in standard cellular assays. Structure-activity relationship, docking and mutagenesis studies revealed the crucial interactions for ligand binding and selectivity. Our results thus provide insights into the structural basis of the distinct functions of the angiotensin receptors, and may guide the design of new selective ligands.


    Organizational Affiliation

    Institute of Pharmacology and Toxicology, College of Pharmaceutical Sciences, Zhejiang University, 866 Yuhangtang Road, Hangzhou, Zhejiang 310058, China.,Department of Physics, University of Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany.,Department of Chemistry, Bridge Institute, University of Southern California, Los Angeles, California 90089, USA.,Center for Free Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, Notkestra├če 85, 22607 Hamburg, Germany.,MRL, Merck &Co., Inc., 503 Louise Lane, North Wales, Pennsylvania 19454, USA.,MRL, Merck &Co., Inc., 770 Sumneytown Pike, West Point, Pennsylvania 19486, USA.,Department of Biological Sciences, Bridge Institute, University of Southern California, Los Angeles, California 90089, USA.,Department of Physics, Arizona State University, Tempe, Arizona 85287, USA.,School of Molecular Sciences and Biodesign Center for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA.,Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.,MRL, Merck &Co., Inc., 2015 Galloping Hill Road, Kenilworth, New Jersey 07033, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Chimera protein of Type-2 angiotensin II receptor and Soluble cytochrome b562
B
411Escherichia coliHomo sapiens
This entity is chimeric
Mutation(s): 3 
Gene Names: cybC, AGTR2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
G Protein-Coupled Receptors (GPCRs)
Protein: 
Angiotensin type II receptor in complex with compound 1 (monoclinic xtals)
Find proteins for P0ABE7 (Escherichia coli)
Go to UniProtKB:  P0ABE7
Find proteins for P50052 (Homo sapiens)
Go to Gene View: AGTR2
Go to UniProtKB:  P50052
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OLC
Query on OLC

Download SDF File 
Download CCD File 
B
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
OLA
Query on OLA

Download SDF File 
Download CCD File 
B
OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
 Ligand Interaction
8ES
Query on 8ES

Download SDF File 
Download CCD File 
B
N-benzyl-N-(2-ethyl-4-oxo-3-{[2'-(2H-tetrazol-5-yl)[1,1'-biphenyl]-4-yl]methyl}-3,4-dihydroquinazolin-6-yl)thiophene-2-carboxamide
C36 H29 N7 O2 S
KDPHUUTUDFDLBT-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.262 
  • R-Value Work: 0.241 
  • Space Group: P 21 2 21
Unit Cell:
Length (Å)Angle (°)
a = 70.260α = 90.00
b = 78.790β = 90.00
c = 93.410γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
CrystFELdata scaling
PHASERphasing
CrystFELdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2017-04-05
    Type: Initial release
  • Version 1.1: 2017-05-10
    Type: Data collection, Database references
  • Version 1.2: 2018-11-28
    Type: Data collection