5UN2

Crystal Structure of Mouse Cadherin-23 EC19-21 with non-syndromic deafness (DFNB12) associated mutation R2029W


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness.

Jaiganesh, A.De-la-Torre, P.Patel, A.A.Termine, D.J.Velez-Cortes, F.Chen, C.Sotomayor, M.

(2018) Structure --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cadherin-23
A
344Mus musculusMutation(s): 1 
Gene Names: Cdh23
Find proteins for Q99PF4 (Mus musculus)
Go to UniProtKB:  Q99PF4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download SDF File 
Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.196 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 189.475α = 90.00
b = 73.908β = 96.62
c = 49.375γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-3000data scaling
REFMACrefinement
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NIH/NIDCD R00United StatesDC012534
NIH/NIDCD R01United StatesDC015271

Revision History 

  • Version 1.0: 2018-02-07
    Type: Initial release
  • Version 1.1: 2018-03-07
    Type: Data collection
  • Version 1.2: 2018-03-21
    Type: Source and taxonomy
  • Version 1.3: 2018-08-01
    Type: Data collection, Database references