5UMV | pdb_00005umv

Crystal structure of the BRCT domain of S. cerevisiae Rev1

• PDB DOI: https://doi.org/10.2210/pdb5UMV/pdb

• Classification: TRANSCRIPTION
• Organism(s): Saccharomyces cerevisiae S288C
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-01-29 Released: 2018-01-31 
• Deposition Author(s): Lee, J., Xu, C., Thompson, J.R., Botuyan, M.V., Mer, G.
• Funding Organization(s): National Institutes of Health/National Cancer Institute (NIH/NCI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 
  0.193 (Depositor), 0.200 (DCC) 
• R-Value Work: 
  0.163 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.164 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the BRCT domain of S. cerevisiae Rev1

Xu, C., Cui, G., Lee, J., Thompson, J.R., Botuyan, M.V., Mer, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 10.7 kDa 
• Atom Count: 879 
• Modeled Residue Count: 90 
• Deposited Residue Count: 93 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DNA repair protein REV1	A	93	Saccharomyces cerevisiae S288C	Mutation(s): 0  Gene Names: REV1, YOR346W, O6339 EC: 2.7.7
UniProt
Find proteins for P12689 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P12689  Go to UniProtKB:  P12689

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free:  0.193 (Depositor), 0.200 (DCC) 
• R-Value Work:  0.163 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.164 (Depositor) 

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.556	α = 90
b = 33.556	β = 90
c = 81.838	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-01-31 
Deposition Author(s): Lee, J., Xu, C., Thompson, J.R., Botuyan, M.V., Mer, G.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)	United States	CA132878

Revision History  

• Version 1.0: 2018-01-31
  Type: Initial release
  
• Version 1.1: 2019-12-04
  Changes: Author supporting evidence
• Version 1.2: 2023-10-04
  Changes: Data collection, Database references, Refinement description