Download MendeleyDesign of ultrahigh-affinity and dual-specificity peptide antagonists of MDM2 and MDMX for p53 activation
Pazgier, M., Gohain, N., Tolbert, W.D.To be published.
5UMM
CRYSTAL STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH 12-MER PEPTIDE INHIBITOR M3
- PDB DOI: 10.2210/pdb5UMM/pdb
- Classification: TRANSFERASE/TRANSFERASE INHIBITOR
- Organism(s): Homo sapiens, synthetic construct
- Mutation(s): No
- Deposited: 2017-01-27 Released: 2018-01-31
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.231
- R-Value Work: 0.178
- R-Value Observed: 0.181
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| E3 ubiquitin-protein ligase Mdm2 | A, C | 85 | Homo sapiens | Mutation(s): 0 Gene Names: MDM2 EC: 2.3.2.27 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q00987 (Homo sapiens) Explore Q00987 Go to UniProtKB: Q00987 | |||||
PHAROS: Q00987 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q00987 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| PEPTIDE INHIBITOR M3 | B, D | 12 | synthetic construct | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | E [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.65 Å
- R-Value Free: 0.231
- R-Value Work: 0.178
- R-Value Observed: 0.181
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 26.567 | α = 90 |
| b = 87.895 | β = 92.3 |
| c = 36.576 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PHASER | phasing |
| HKL-2000 | data scaling |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Deposited Date: 2017-01-27
- Released Date: 2018-01-31 Deposition Author(s): Pazgier, M., Gohain, N., Tolbert, W.D.
Revision History (Full details and data files)
- Version 1.0: 2018-01-31
Type: Initial release - Version 1.1: 2019-04-17
Changes: Advisory, Author supporting evidence, Data collection, Derived calculations, Source and taxonomy - Version 1.2: 2020-10-21
Changes: Database references, Structure summary
