5ULB

Crystal structure of sugar ABC transporter from Yersinia enterocolitica subsp. enterocolitica 8081


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.110 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of sugar ABC transporter from Yersinia enterocolitica subsp. enterocolitica 8081

Nocek, B.Bigelow, L.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative sugar ABC transporter
A
337Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)Mutation(s): 0 
Find proteins for A1JTX8 (Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081))
Go to UniProtKB:  A1JTX8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
8GG
Query on 8GG

Download SDF File 
Download CCD File 
A
5-Se-methyl-5-seleno-beta-D-ribofuranose
C6 H12 O4 Se
UFNQFLPLDXICBS-KVTDHHQDSA-N
 Ligand Interaction
8GA
Query on 8GA

Download SDF File 
Download CCD File 
A
5-Se-methyl-5-seleno-alpha-D-ribofuranose
C6 H12 O4 Se
UFNQFLPLDXICBS-KAZBKCHUSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.110 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.993α = 90.00
b = 55.856β = 90.00
c = 119.573γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
HKL-3000phasing
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-09-12
    Type: Initial release