5UJE

SbnI with C-terminal truncation from Staphylococcus aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.252 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

SbnI, a regulator of siderophore expression, obtains heme from the heme-degrading enzyme IsdI in Staphylococcus aureus

Verstraete, M.M.Kobylarz, M.J.Loutet, S.A.Laakso, H.A.Heinrichs, D.E.Murphy, M.E.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SbnI protein
A
242Staphylococcus aureus (strain NCTC 8325)Mutation(s): 0 
Find proteins for Q2G1M5 (Staphylococcus aureus (strain NCTC 8325))
Go to UniProtKB:  Q2G1M5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.252 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 55.120α = 90.00
b = 55.120β = 90.00
c = 92.690γ = 120.00
Software Package:
Software NamePurpose
SOLVEphasing
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanadaMOP-49597

Revision History 

  • Version 1.0: 2018-01-24
    Type: Initial release