5UEJ

1.30 A crystal structure of DapE enzyme from Neisseria meningitidis MC58


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.113 
  • R-Value Observed: 0.115 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

1.30 A crystal structure of DapE enzyme from Neisseria meningitidis MC58

Nocek, B.Heath, T.Becker, D.Joachimiak, A.Anderson, W.F.Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Succinyl-diaminopimelate desuccinylaseA, B384Neisseria meningitidisMutation(s): 0 
Gene Names: dapENMB1530
EC: 3.5.1.18
UniProt
Find proteins for Q9JYL2 (Neisseria meningitidis serogroup B (strain MC58))
Explore Q9JYL2 
Go to UniProtKB:  Q9JYL2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9JYL2
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 0.153 
  • R-Value Work: 0.113 
  • R-Value Observed: 0.115 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.767α = 90
b = 88.644β = 90
c = 133.402γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
MOLREPphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-02-01
    Type: Initial release
  • Version 1.1: 2017-02-08
    Changes: Database references, Structure summary
  • Version 1.2: 2017-08-23
    Changes: Data collection