5UBY

Fab structure of anti-HIV-1 gp120 mAb 1A8

  • Classification: IMMUNE SYSTEM
  • Expression System: Mammalia

  • Deposited: 2016-12-21 Released: 2018-01-10 
  • Deposition Author(s): Pan, R., Kong, X.-P.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

High Antibody Diversity and Low Inter-clonal Competition Favor Production of Functional Neutralizing Antibodies

Smith, S.A.Burton, S.L.Spicer, L.Pan, R.Kilembe, W.Lakhi, S.Karita, E.Price, M.Allen, S.Hunter, E.Kong, X.-P.Derdeyn, C.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Heavy chain of Fab fragment of anti-HIV1 gp120 mAb 1A8
H
228N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Light chain of Fab fragment of anti-HIV1 gp120 mAb 1A8
L
211N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.188 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 140.098α = 90.00
b = 40.121β = 104.89
c = 77.195γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXmodel building
PHENIXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2016-12-21 
  • Released Date: 2018-01-10 
  • Deposition Author(s): Pan, R., Kong, X.-P.

Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI58706
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesAI100151

Revision History 

  • Version 1.0: 2018-01-10
    Type: Initial release